So the solution to the original problem is that you don't need both the "@see" and the "{@link...}" references on the same line. The "@link" tag is self-sufficient and, as noted, you can put it anywhere in the javadoc block. So you can mix the two approaches:
/**
* some javadoc stuff
* {@link com.my.package.Class#method()}
* more stuff
* @see com.my.package.AnotherClass
*/