request.getContextPath()-
returns root path of your application, while
../
- returns parent directory of a file.
You use request.getContextPath(), as it will always points to root of your application. If you were to move your jsp file from one directory to another, nothing needs to be changed. Now, consider the second approach. If you were to move your jsp files from one folder to another, you'd have to make changes at every location where you are referring your files.
Also, better approach of using request.getContextPath() will be to set 'request.getContextPath()' in a variable and use that variable for referring your path.
<c:set var="context" value="${pageContext.request.contextPath}" />
<script src="${context}/themes/js/jquery.js"></script>
PS- This is the one reason I can figure out. Don't know if there is any more significance to it.