Excellent answer! I do have a small addition. Regarding this solution:
TypedQuery<CustomObject> typedQuery = em.createQuery(query , String query = "SELECT NEW CustomObject(i.firstProperty, i.secondProperty) FROM ObjectName i WHERE i.id=100";
TypedQuery<CustomObject> typedQuery = em.createQuery(query , CustomObject.class);
List<CustomObject> results = typedQuery.getResultList();CustomObject.class);
To prevent a class not found error simply insert the full package name. Assuming org.company.directory is the package name of CustomObject:
String query = "SELECT NEW org.company.directory.CustomObject(i.firstProperty, i.secondProperty) FROM ObjectName i WHERE i.id=10";
TypedQuery<CustomObject> typedQuery = em.createQuery(query , CustomObject.class);
List<CustomObject> results = typedQuery.getResultList();