I spent an entire day bashing my head against this, the solution turned out to be simple..
R isn't zero-index.
Every programming language that I've used before has it's data start at 0, R starts at 1. The result is an off-by-one error but in the opposite direction of the usual. going out of bounds on a data structure returns null and comparing null in an if statement gives the argument is of length zero error. The confusion started because the dataset doesn't contain any null, and starting at position [0] like any other pgramming language turned out to be out of bounds.
Perhaps starting at 1 makes more sense to people with no programming experience (the target market for R?) but for a programmer is a real head scratcher if you're unaware of this.