[r] Confusing error in R: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 42 elements)

read.table wants to return a data.frame, which must have an element in each column. Therefore R expects each row to have the same number of elements and it doesn't fill in empty spaces by default. Try read.table("/PathTo/file.csv" , fill = TRUE ) to fill in the blanks.

e.g.

read.table( text= "Element1 Element2
Element5 Element6 Element7" , fill = TRUE , header = FALSE )
#        V1       V2       V3
#1 Element1 Element2         
#2 Element5 Element6 Element7

A note on whether or not to set header = FALSE... read.table tries to automatically determine if you have a header row thus:

header is set to TRUE if and only if the first row contains one fewer field than the number of columns