Here's a pretty decent example of how you can use the Bootstrap modal within an Angular2 app on GitHub.
The gist of it is that you can wrap the bootstrap html and jquery initialization in a component. I've created a reusable modal component that allows you to trigger an open using a template variable.
<button type="button" class="btn btn-default" (click)="modal.open()">Open me!</button>
<modal #modal>
<modal-header [show-close]="true">
<h4 class="modal-title">I'm a modal!</h4>
</modal-header>
<modal-body>
Hello World!
</modal-body>
<modal-footer [show-default-buttons]="true"></modal-footer>
</modal>
You just need to install the npm package and register the modal module in your app module:
import { Ng2Bs3ModalModule } from 'ng2-bs3-modal/ng2-bs3-modal';
@NgModule({
imports: [Ng2Bs3ModalModule]
})
export class MyAppModule {}